SubtiBank SubtiBank
ywbF [2018-10-04 20:36:09]
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ywbF [2018-10-04 20:36:09]

unknown
locus
BSU38340
pI
9.70
mw
43.85 kDa
protein length
399 aa Sequence Blast
gene length
1197 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
ipa-21r
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    3,934,358 → 3,935,557

    The protein

    Protein family

  • [SW|major facilitator superfamily] (according to UniProt)
  • HcaT subfamily (according to Swiss-Prot)

    • [SW|Localization]

  • cell membrane (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|7EBA1CC70E1E8A73D0E7B3969522633EC42C1C2E|ywbF]-[gene|A63DF11087CEA2D8F5852E6540EFDF0EBCAB96B1|ywbE]
    description
    [pubmed|22383849]

    regulatory mechanism

  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: repression, [Pubmed|20817675], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]
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    Biological materials

    Mutant

  • MGNA-B223 (ywbF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1222 NBRP B. subtilis, Japan]
  • BKE38340 (Δ[gene|7EBA1CC70E1E8A73D0E7B3969522633EC42C1C2E|ywbF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE38340 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCAGGGTGCCTCCTTTGG, downstream forward: _UP4_TAATGACTATAATGAACAAA
  • BKK38340 (Δ[gene|7EBA1CC70E1E8A73D0E7B3969522633EC42C1C2E|ywbF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK38340 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCAGGGTGCCTCCTTTGG, downstream forward: _UP4_TAATGACTATAATGAACAAA

    • References

  • 220817675